Observation

Last updated: 25 Nov 2024

Introduction #

The Observation model represents measurements or assertions made about a patient, such as vital signs, lab results, or other clinical findings.

Basic usage #

To get an observation by identifier, use the get method on the Observation model manager:

from canvas_sdk.v1.data.observation import Observation

observation = Observation.objects.get(id="b80b1cdc-2e6a-4aca-90cc-ebc02e683f35")

If you have a patient object, the observations for a patient can be accessed with the observations attribute on a Patient object:

from canvas_sdk.v1.data.patient import Patient

patient = Patient.objects.get(id="1eed3ea2a8d546a1b681a2a45de1d790")
observations = patient.observations.all()

If you have a patient ID, you can get the observations for the patient with the for_patient method on the Observation model manager:

from canvas_sdk.v1.data.observation import Observation

patient_id = "1eed3ea2a8d546a1b681a2a45de1d790"
observations = Observation.objects.for_patient(patient_id)

Codings #

The codings for an observation can be accessed with the codings attribute on an Observation object:

from canvas_sdk.v1.data.observation import Observation
from logger import log

observation = Observation.objects.get(id="b80b1cdc-2e6a-4aca-90cc-ebc02e683f35")

for coding in observation.codings.all():
    log.info(f"system:  {coding.system}")
    log.info(f"code:    {coding.code}")
    log.info(f"display: {coding.display}")

Components #

The components for an observation can be accessed with the components attribute on an Observation object:

from canvas_sdk.v1.data.observation import Observation
from logger import log

observation = Observation.objects.get(id="b80b1cdc-2e6a-4aca-90cc-ebc02e683f35")

for component in observation.components.all():
    log.info(f"name: {component.name}")
    log.info(f"value: {component.value_quantity}")
    log.info(f"unit: {component.value_quantity_unit}")

Component codings #

Component codings can be accessed similarly to codings on the observation, by using the codings attribute on an ObservationComponent object.

Filtering #

Observations can be filtered by any attribute that exists on the model.

By attribute #

Specify an attribute with filter to filter by that attribute:

from canvas_sdk.v1.data.observation import Observation

observations = Observation.objects.filter(effective_datetime__gte="2024-11-20")

By ValueSet #

Filtering by ValueSet works a little differently. The find method on the model manager is used to perform ValueSet filtering:

from canvas_sdk.v1.data.observation import Observation
from canvas_sdk.value_set.v2022.physical_exam import Weight

observations = Observation.objects.find(Weight)

Attributes #

Observation #

Field Name	Type
id	UUID
dbid	Integer
created	DateTime
modified	DateTime
originator	CanvasUser
committer	CanvasUser
entered_in_error	CanvasUser
deleted	Boolean
patient	Patient
is_member_of	Observation
category	String
units	String
value	String
note_id	Integer
name	String
effective_datetime	DateTime

ObservationCoding #

Field Name	Type
dbid	Integer
system	String
version	String
code	String
display	String
user_selected	Boolean
observation	Observation

ObservationComponent #

Field Name	Type
dbid	Integer
created	DateTime
modified	DateTime
observation	Observation
value_quantity	String
value_quantity_unit	String
name	String

ObservationComponentCoding #

Field Name	Type
dbid	Integer
system	String
version	String
code	String
display	String
user_selected	Boolean
observation_component	ObservationComponent

ObservationValueCoding #

Field Name	Type
dbid	Integer
system	String
version	String
code	String
display	String
user_selected	Boolean
observation	Observation